Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R8A9_PETMAUSP domain-containing protein; Belongs to the peptidase C19 family. (3604 aa)    
Predicted Functional Partners:
S4RNL4_PETMA
WWE domain-containing protein.
   
 
 0.985
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
   
 0.937
UBB
Ubiquitin B.
   
 0.900
S4RJQ8_PETMA
Uncharacterized protein.
   
 
 0.898
S4R4T2_PETMA
WW domain-containing protein.
   
   0.847
S4REI3_PETMA
Baculoviral IAP repeat containing 6.
   
 0.847
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
   0.846
S4RE66_PETMA
TFIIS central domain-containing protein.
   
 
  0.830
S4RBG7_PETMA
UBR-type domain-containing protein.
   
 
 0.792
S4RY64_PETMA
Uncharacterized protein.
   
    0.788
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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