Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8C5_PETMACysteine/histidine-rich 1. (282 aa)    
Predicted Functional Partners:
S4RKZ1_PETMA
RAB guanine nucleotide exchange factor (GEF) 1.
    
   0.674
S4R7X0_PETMA
Exosome component 4.
   
  
 0.667
S4RAA7_PETMA
PEHE domain-containing protein.
      
 0.657
S4RLW2_PETMA
FAST kinase domains 1.
      
 0.633
S4RKM6_PETMA
Toll interacting protein.
    
   0.621
S4RV24_PETMA
Muskelin 1, intracellular mediator containing kelch motifs.
      
 0.614
S4RDZ2_PETMA
Uncharacterized protein.
    
   0.552
S4R7E5_PETMA
Uncharacterized protein.
   
  
 0.539
S4RE76_PETMA
Cleavage and polyadenylation specific factor 1.
    
 
 0.503
S4RQ83_PETMA
Tonsoku-like, DNA repair protein.
    
 
 0.496
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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