Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8D0_PETMAIF rod domain-containing protein; Belongs to the intermediate filament family. (468 aa)    
Predicted Functional Partners:
S4RI41_PETMA
Kertain 95; Belongs to the intermediate filament family.
  
0.749
S4RRT1_PETMA
Wu:fk65c09; Belongs to the intermediate filament family.
  
0.749
S4RM36_PETMA
Uncharacterized protein.
    
 0.731
S4RFE7_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
 0.715
S4RHC8_PETMA
INO80 complex subunit Db.
    
 0.696
S4RHF3_PETMA
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.696
RANBP2
RAN binding protein 2.
    
 0.696
S4RGB8_PETMA
INO80 complex subunit C.
    
 0.685
S4RN62_PETMA
Actin-like 6A; Belongs to the actin family.
   
 0.678
S4RUB8_PETMA
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
  0.674
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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