STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8D2_PETMAIF rod domain-containing protein; Belongs to the intermediate filament family. (436 aa)    
Predicted Functional Partners:
S4RI41_PETMA
Kertain 95; Belongs to the intermediate filament family.
  
 
0.591
S4RFE7_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
 
0.580
S4RRT1_PETMA
Wu:fk65c09; Belongs to the intermediate filament family.
  
 
0.580
S4R5F3_PETMA
RunxI domain-containing protein.
    
  0.535
S4RBT0_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
 
0.532
S4REL5_PETMA
Uncharacterized protein.
    
 
 0.532
S4R781_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
  0.503
S4R8D0_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
  0.503
S4RYL9_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
  0.503
S4RF29_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
  0.489
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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