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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8D3_PETMALIM zinc-binding domain-containing protein. (125 aa)    
Predicted Functional Partners:
S4RZP1_PETMA
Uncharacterized protein.
    
 0.889
S4R834_PETMA
DEP domain-containing protein.
    
 0.887
S4RMR7_PETMA
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.786
S4RS66_PETMA
TNF receptor-associated factor.
    
 0.770
S4RUY7_PETMA
Uncharacterized protein.
    
 0.736
S4R4E5_PETMA
TNF receptor-associated factor.
    
 0.662
S4RQD6_PETMA
GATA binding protein 3.
    
 0.561
S4REN7_PETMA
Proteasome 26S subunit, non-ATPase 3.
    
  0.556
S4R4K9_PETMA
VASP_tetra domain-containing protein.
    
 0.543
S4RNB4_PETMA
WH1 domain-containing protein.
    
 0.543
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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