STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8D3_PETMALIM zinc-binding domain-containing protein. (125 aa)    
Predicted Functional Partners:
S4RD61_PETMA
Uncharacterized protein.
  
  
 
0.905
S4RW60_PETMA
Four and a half LIM domains 5.
  
  
 
0.902
S4R834_PETMA
DEP domain-containing protein.
    
 0.797
S4RZP1_PETMA
Uncharacterized protein.
    
 0.727
S4R4S7_PETMA
GATA binding protein 4.
    
 0.695
S4RK02_PETMA
Uncharacterized protein.
    
 
 0.693
S4RLW1_PETMA
Ig-like domain-containing protein.
    
 
 0.693
S4RQD6_PETMA
GATA binding protein 3.
    
 0.656
S4RXB3_PETMA
WT1 transcription factor a.
    
 
 0.642
S4RR33_PETMA
SRY-box transcription factor 10.
    
 
 0.615
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.