STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8D7_PETMABardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family. (342 aa)    
Predicted Functional Partners:
S4RMU3_PETMA
Bardet-Biedl syndrome 1.
    
 0.968
S4RCU3_PETMA
Bardet-Biedl syndrome 7.
   
 0.948
S4RQ24_PETMA
Bardet-Biedl syndrome 4.
    
 0.946
S4RL84_PETMA
Bardet-Biedl syndrome 2 protein homolog.
    
 0.945
S4R5R9_PETMA
PHTB1_C domain-containing protein.
   
 0.928
S4RUH2_PETMA
PHTB1_N domain-containing protein.
   
 0.928
S4RBX0_PETMA
Uncharacterized protein.
  
 0.926
TTC8
Tetratricopeptide repeat domain 8.
   
 0.910
S4RTP4_PETMA
Leucine zipper transcription factor-like 1.
   
 0.782
S4RHX4_PETMA
Cullin 1b; Belongs to the cullin family.
    
 0.733
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.