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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8E3_PETMAHomeobox domain-containing protein. (114 aa)    
Predicted Functional Partners:
S4RNQ2_PETMA
Link domain-containing protein.
     
 0.881
S4RXR2_PETMA
Dicer 1, ribonuclease type III.
     
 0.827
S4RG84_PETMA
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59.
    
  0.803
GPR149
G protein-coupled receptor 149.
    
  0.803
S4RPN6_PETMA
Empty spiracles homeobox 2.
   
 
0.747
S4RUW0_PETMA
Homeobox domain-containing protein.
   
 
0.747
S4S0A7_PETMA
Uncharacterized protein.
   
  0.747
S4S178_PETMA
Homeobox domain-containing protein.
   
  0.747
S4RIC2_PETMA
HMG box domain-containing protein.
    
 0.738
S4R517_PETMA
Signal transducer and activator of transcription.
     
 0.717
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.