Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8E3_PETMAHomeobox domain-containing protein. (114 aa)    
Predicted Functional Partners:
SALL3
Uncharacterized protein.
   
 0.710
S4RUS9_PETMA
Spalt-like transcription factor 1b.
   
 0.710
S4RIC2_PETMA
HMG box domain-containing protein.
    
 0.688
S4RFH9_PETMA
Speckle type BTB/POZ protein like a.
    
   0.667
S4RME2_PETMA
Uncharacterized protein.
    
   0.667
S4RRI4_PETMA
Glutaredoxin 3.
    
 
 0.643
Q9PRN2_PETMA
Op_neuropeptide domain-containing protein.
      
 0.590
S4S1L5_PETMA
Neuropeptide Y; Belongs to the NPY family.
      
 0.590
S4RI93_PETMA
Sodium channel, voltage-gated, type III, beta.
      
 0.556
S4RGI4_PETMA
Uncharacterized protein.
    
   0.548
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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