Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4R8E5_PETMARibosomal protein, large, P0. (161 aa)    
Predicted Functional Partners:
RPLP1
Ribosomal protein, large, P1; Belongs to the eukaryotic ribosomal protein P1/P2 family.
  
 0.998
S4RMY0_PETMA
Ribosomal protein L12.
  
 0.998
S4RZ84_PETMA
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.998
RPL3L
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
  
 0.997
S4R718_PETMA
Ribosomal protein L4.
  
 0.997
S4RAQ9_PETMA
Ribosomal_L18_c domain-containing protein.
  
 0.997
S4RFB7_PETMA
Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.
  
 0.997
S4RFI6_PETMA
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
  
 0.997
S4RQ72_PETMA
Ribosomal_L7Ae domain-containing protein.
   
 0.997
S4RWR0_PETMA
Ribosomal protein L8.
  
 0.997
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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