Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R8F1_PETMACOP9 signalosome subunit 3. (423 aa)    
Predicted Functional Partners:
S4R7M4_PETMA
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
   
 0.999
S4R8J4_PETMA
COP9 signalosome subunit 2.
   
 0.999
COPS7B
COP9 signalosome subunit 7B.
    
 0.999
S4RIE0_PETMA
PCI domain-containing protein.
   
 0.999
S4RM40_PETMA
MPN domain-containing protein.
   
 0.999
S4RWP1_PETMA
MPN domain-containing protein.
   
 0.999
S4RL58_PETMA
Damage-specific DNA binding protein 2.
    
  0.996
S4RVX6_PETMA
Damage-specific DNA binding protein 1.
    
 0.994
S4RHX4_PETMA
Cullin 1b; Belongs to the cullin family.
   
 0.990
S4RNZ6_PETMA
Cullin 4B; Belongs to the cullin family.
    
 0.990
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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