STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8F6_PETMAYip1 domain family, member 3. (260 aa)    
Predicted Functional Partners:
S4REB6_PETMA
Protein YIPF.
    
 
 0.970
S4RVC9_PETMA
Protein YIPF.
   
 
 0.882
S4RTX4_PETMA
Protein YIPF.
    
 
 0.814
TVP23A
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.809
S4RFZ4_PETMA
Protein YIPF.
   
  
 0.767
S4RR98_PETMA
Ring-box 1, E3 ubiquitin protein ligase.
      
 0.693
S4R8I1_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
      
 0.650
S4RLV7_PETMA
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
    
   0.569
S4RPI3_PETMA
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
      
 0.541
S4REZ2_PETMA
Transmembrane p24 trafficking protein 2.
    
 
 0.508
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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