Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8F8_PETMAUnk like zinc finger. (287 aa)    
Predicted Functional Partners:
S4RSY0_PETMA
Protein tweety homolog; Probable chloride channel.
      
 0.608
S4R4U3_PETMA
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
      
 0.551
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.537
S4RP35_PETMA
Uncharacterized protein.
      
 0.458
S4RLU6_PETMA
Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.454
S4RU88_PETMA
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.454
S4RU47_PETMA
Ubiquitin-conjugating enzyme E2C.
    
   0.453
S4RZB9_PETMA
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]
    
  0.449
S4RN38_PETMA
Ubiquitin-like modifier activating enzyme 3.
    
  0.448
S4R5G1_PETMA
Uncharacterized protein.
      
 0.440
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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