Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DNASE1Deoxyribonuclease 1. (155 aa)    
Predicted Functional Partners:
S4RFT8_PETMA
Uncharacterized protein.
    
   0.677
S4RFP0_PETMA
SET domain-containing protein.
    
   0.665
S4R8K9_PETMA
HDAC_interact domain-containing protein.
    
 
 0.625
S4R9A1_PETMA
Uncharacterized protein.
   
    0.605
CYB5D2
Cytochrome b5 domain containing 2.
      
 0.600
S4RA25_PETMA
Uncharacterized protein.
    
   0.589
S4RJZ9_PETMA
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.589
S4RSG5_PETMA
WH2 domain-containing protein.
    
   0.589
SLC25A21
Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.583
S4S016_PETMA
Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.583
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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