Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8G0_PETMAUncharacterized protein. (210 aa)    
Predicted Functional Partners:
S4RSS8_PETMA
Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
      0.899
S4R4W6_PETMA
Uncharacterized protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
      0.898
S4RYB8_PETMA
Solute carrier family 5 member 5; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
      0.824
S4RYJ4_PETMA
Solute carrier family 15 member 1b.
  
  
 0.447
S4RK13_PETMA
GHMP_kinases_C domain-containing protein.
    
  0.423
S4RGA8_PETMA
Uncharacterized protein.
    
  0.406
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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