Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8G5_PETMAMitochondrial elongation factor 1. (439 aa)    
Predicted Functional Partners:
S4RMZ2_PETMA
Si:zfos-1192g2.3.
     
  0.960
NDUFAB1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
     
  0.960
S4R983_PETMA
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
     
  0.713
S4RBS3_PETMA
Mitochondrial ribosomal protein L15.
     
  0.713
S4REV2_PETMA
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
     
  0.713
S4RUL7_PETMA
Mitochondrial ribosomal protein L42.
     
  0.713
S4RUR5_PETMA
Mitochondrial ribosomal protein L46.
     
  0.713
S4S0I0_PETMA
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.
     
  0.713
S4R6W8_PETMA
Zgc:171480.
     
  0.618
S4RHD2_PETMA
Mitochondrial ribosomal protein L28.
     
  0.599
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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