S4R8H1_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R8H1_PETMA

Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (199 aa)

Predicted Functional Partners:

S4RBH4_PETMA

0.999

S4RJP6_PETMA

0.985

S4RKP9_PETMA

0.985

S4RDU8_PETMA

0.984

NCBP1

0.978

S4RD25_PETMA

0.976

S4RU06_PETMA

0.976

EIF3B

0.973

S4RRR6_PETMA

0.964

S4RSN8_PETMA

0.960

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF3B	NCBP1	ENSPMAP00000005927	ENSPMAP00000006129	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Nuclear cap binding protein subunit 1.	0.816
EIF3B	S4R8H1_PETMA	ENSPMAP00000005927	ENSPMAP00000001502	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.973
EIF3B	S4RBH4_PETMA	ENSPMAP00000005927	ENSPMAP00000002555	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	MIF4G domain-containing protein.	0.965
EIF3B	S4RD25_PETMA	ENSPMAP00000005927	ENSPMAP00000003107	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Poly(A) binding protein, cytoplasmic 4 (inducible form).	0.706
EIF3B	S4RDU8_PETMA	ENSPMAP00000005927	ENSPMAP00000003380	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Eukaryotic translation initiation factor 4, gamma 2a.	0.856
EIF3B	S4RRR6_PETMA	ENSPMAP00000005927	ENSPMAP00000007903	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.681
EIF3B	S4RSN8_PETMA	ENSPMAP00000005927	ENSPMAP00000008228	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.978
EIF3B	S4RU06_PETMA	ENSPMAP00000005927	ENSPMAP00000008696	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.706
NCBP1	EIF3B	ENSPMAP00000006129	ENSPMAP00000005927	Nuclear cap binding protein subunit 1.	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.816
NCBP1	S4R8H1_PETMA	ENSPMAP00000006129	ENSPMAP00000001502	Nuclear cap binding protein subunit 1.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.978
NCBP1	S4RBH4_PETMA	ENSPMAP00000006129	ENSPMAP00000002555	Nuclear cap binding protein subunit 1.	MIF4G domain-containing protein.	0.981
NCBP1	S4RD25_PETMA	ENSPMAP00000006129	ENSPMAP00000003107	Nuclear cap binding protein subunit 1.	Poly(A) binding protein, cytoplasmic 4 (inducible form).	0.951
NCBP1	S4RDU8_PETMA	ENSPMAP00000006129	ENSPMAP00000003380	Nuclear cap binding protein subunit 1.	Eukaryotic translation initiation factor 4, gamma 2a.	0.979
NCBP1	S4RRR6_PETMA	ENSPMAP00000006129	ENSPMAP00000007903	Nuclear cap binding protein subunit 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.488
NCBP1	S4RSN8_PETMA	ENSPMAP00000006129	ENSPMAP00000008228	Nuclear cap binding protein subunit 1.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.573
NCBP1	S4RU06_PETMA	ENSPMAP00000006129	ENSPMAP00000008696	Nuclear cap binding protein subunit 1.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.951
S4R8H1_PETMA	EIF3B	ENSPMAP00000001502	ENSPMAP00000005927	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 3 subunit B; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.973
S4R8H1_PETMA	NCBP1	ENSPMAP00000001502	ENSPMAP00000006129	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Nuclear cap binding protein subunit 1.	0.978
S4R8H1_PETMA	S4RBH4_PETMA	ENSPMAP00000001502	ENSPMAP00000002555	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.999
S4R8H1_PETMA	S4RD25_PETMA	ENSPMAP00000001502	ENSPMAP00000003107	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Poly(A) binding protein, cytoplasmic 4 (inducible form).	0.976