Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8H2_PETMATransmembrane and ubiquitin-like domain containing 2. (308 aa)    
Predicted Functional Partners:
S4RY23_PETMA
Cholesterol 25-hydroxylase like 3.
    
 
 0.803
S4RW32_PETMA
Transmembrane protein 53.
      
 0.512
S4RNF5_PETMA
Gem (nuclear organelle) associated protein 4.
      
 0.495
FCF1
FCF1 rRNA-processing protein.
      
 0.460
S4RBB7_PETMA
TBC1 domain family, member 10b.
   
  
 0.460
S4RLN9_PETMA
Uncharacterized protein.
      
 0.460
S4R7P4_PETMA
Family with sequence similarity 8 member A1b.
      
 0.459
S4RHC4_PETMA
HERPUD family member 2.
      
 0.449
S4RCW0_PETMA
Dephospho-CoA kinase domain containing.
      
 0.440
S4RED6_PETMA
Uncharacterized protein.
      
 0.421
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.