Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
S4R8H7_PETMAMyelin expression factor 2. (563 aa)    
Predicted Functional Partners:
S4R8V9_PETMA
Uncharacterized protein.
    
 
 0.727
S4RWJ8_PETMA
NAC-A/B domain-containing protein.
    
 
 0.670
S4R848_PETMA
Uncharacterized protein.
    
 0.665
S4R8R2_PETMA
Tubulin tyrosine ligase-like family, member 12.
      
 0.650
S4RGG7_PETMA
SRY-box transcription factor 3.
    
 
 0.593
S4RZR4_PETMA
SRY-box transcription factor 1b.
    
 
 0.593
S4R4Q9_PETMA
LisH domain-containing protein.
    
 0.589
SNRPC
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]
   
 0.551
YTHDC2
YTH domain containing 2.
    
 
 0.548
S4RGC0_PETMA
Nucleolin.
  
 
 0.534
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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