Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R8I7_PETMALimb development membrane protein 1-like; Belongs to the LIMR family. (418 aa)    
Predicted Functional Partners:
S4R4M6_PETMA
ProRS-C_1 domain-containing protein.
    
 
 0.693
S4R4M7_PETMA
Uncharacterized protein.
    
 
 0.693
S4RAV6_PETMA
MI domain-containing protein.
      
 0.552
S4RVR2_PETMA
Dual specificity phosphatase 28.
      
 0.547
S4R6E7_PETMA
PBPe domain-containing protein.
      
 0.537
S4RDB1_PETMA
Zinc finger and BTB domain containing 16a.
     
 0.526
S4RIU0_PETMA
Sigma non-opioid intracellular receptor 1.
    
 
 0.518
SHH
Sonic hedgehog signaling molecule.
 
    
 0.491
S4R5N5_PETMA
Uncharacterized protein.
     
  0.455
S4RAH5_PETMA
Mitochondrial ribosomal protein S28.
     
  0.455
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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