S4R8J9_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R8J9_PETMA

Uncharacterized protein. (788 aa)

Predicted Functional Partners:

PAGR1

0.976

S4RQE0_PETMA

0.974

S4RQW7_PETMA

0.970

S4RSQ5_PETMA

0.963

S4RKR5_PETMA

0.956

S4RHC2_PETMA

0.953

S4RG41_PETMA

0.948

S4RMF0_PETMA

0.938

S4RPZ6_PETMA

0.933

S4RZ01_PETMA

0.924

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAGR1	S4R8J9_PETMA	ENSPMAP00000009105	ENSPMAP00000001530	PAXIP1 associated glutamate rich protein 1.	Uncharacterized protein.	0.976
PAGR1	S4RKR5_PETMA	ENSPMAP00000009105	ENSPMAP00000005798	PAXIP1 associated glutamate rich protein 1.	Nucleic_acid_bd domain-containing protein.	0.967
PAGR1	S4RMF0_PETMA	ENSPMAP00000009105	ENSPMAP00000006386	PAXIP1 associated glutamate rich protein 1.	BRCT domain-containing protein.	0.976
PAGR1	S4RQE0_PETMA	ENSPMAP00000009105	ENSPMAP00000007426	PAXIP1 associated glutamate rich protein 1.	Retinoblastoma binding protein 5.	0.971
S4R8J9_PETMA	PAGR1	ENSPMAP00000001530	ENSPMAP00000009105	Uncharacterized protein.	PAXIP1 associated glutamate rich protein 1.	0.976
S4R8J9_PETMA	S4RG41_PETMA	ENSPMAP00000001530	ENSPMAP00000004173	Uncharacterized protein.	FHA domain-containing protein.	0.948
S4R8J9_PETMA	S4RHC2_PETMA	ENSPMAP00000001530	ENSPMAP00000004604	Uncharacterized protein.	RAD50 homolog, double strand break repair protein.	0.953
S4R8J9_PETMA	S4RKR5_PETMA	ENSPMAP00000001530	ENSPMAP00000005798	Uncharacterized protein.	Nucleic_acid_bd domain-containing protein.	0.956
S4R8J9_PETMA	S4RMF0_PETMA	ENSPMAP00000001530	ENSPMAP00000006386	Uncharacterized protein.	BRCT domain-containing protein.	0.938
S4R8J9_PETMA	S4RPZ6_PETMA	ENSPMAP00000001530	ENSPMAP00000007282	Uncharacterized protein.	MRE11 homolog A, double strand break repair nuclease.	0.933
S4R8J9_PETMA	S4RQE0_PETMA	ENSPMAP00000001530	ENSPMAP00000007426	Uncharacterized protein.	Retinoblastoma binding protein 5.	0.974
S4R8J9_PETMA	S4RQW7_PETMA	ENSPMAP00000001530	ENSPMAP00000007603	Uncharacterized protein.	BRCT domain-containing protein.	0.970
S4R8J9_PETMA	S4RSQ5_PETMA	ENSPMAP00000001530	ENSPMAP00000008245	Uncharacterized protein.	Uncharacterized protein.	0.963
S4R8J9_PETMA	S4RZ01_PETMA	ENSPMAP00000001530	ENSPMAP00000010442	Uncharacterized protein.	Uncharacterized protein.	0.924
S4RG41_PETMA	S4R8J9_PETMA	ENSPMAP00000004173	ENSPMAP00000001530	FHA domain-containing protein.	Uncharacterized protein.	0.948
S4RG41_PETMA	S4RHC2_PETMA	ENSPMAP00000004173	ENSPMAP00000004604	FHA domain-containing protein.	RAD50 homolog, double strand break repair protein.	0.999
S4RG41_PETMA	S4RMF0_PETMA	ENSPMAP00000004173	ENSPMAP00000006386	FHA domain-containing protein.	BRCT domain-containing protein.	0.948
S4RG41_PETMA	S4RPZ6_PETMA	ENSPMAP00000004173	ENSPMAP00000007282	FHA domain-containing protein.	MRE11 homolog A, double strand break repair nuclease.	0.999
S4RG41_PETMA	S4RQW7_PETMA	ENSPMAP00000004173	ENSPMAP00000007603	FHA domain-containing protein.	BRCT domain-containing protein.	0.991
S4RG41_PETMA	S4RSQ5_PETMA	ENSPMAP00000004173	ENSPMAP00000008245	FHA domain-containing protein.	Uncharacterized protein.	0.931