STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8K6_PETMAAconitase 1, soluble; Belongs to the aconitase/IPM isomerase family. (894 aa)    
Predicted Functional Partners:
S4RXU5_PETMA
Citrate synthase; Belongs to the citrate synthase family.
  
 0.993
S4R485_PETMA
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.992
S4R5Z6_PETMA
SUMO peptidase family member, NEDD8 specific.
  
 
 0.975
SUCLG1
Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and specificity for either ATP or GTP is provided by different beta subunits.
  
 0.930
S4RK47_PETMA
F-box and leucine-rich repeat protein 5.
    
 0.930
S4RE81_PETMA
Isocitrate dehydrogenase (NAD(+)) 3 gamma.
  
 0.913
S4RA83_PETMA
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
 0.911
S4RQE6_PETMA
3-hydroxy-3-methylglutaryl-CoA lyase.
  
 
 0.908
SODM_PETMA
Superoxide dismutase [Mn], mitochondrial; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
   
 
 0.892
S4RYY5_PETMA
Ribosomal protein L11.
   
 
 0.843
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.