Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8K8_PETMAVHS domain-containing protein. (275 aa)    
Predicted Functional Partners:
S4RKM6_PETMA
Toll interacting protein.
   
 
 0.904
UBB
Ubiquitin B.
    
   0.661
S4R4N9_PETMA
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.651
S4RC08_PETMA
Uncharacterized protein.
    
 
 0.607
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
   0.589
S4R642_PETMA
ADP-ribosylation factor-like 15b.
    
 0.583
S4S0T0_PETMA
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.583
ARF6
ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.
    
 0.583
S4RR10_PETMA
Zinc finger, AN1-type domain 4.
    
  0.556
S4RQL0_PETMA
UEV domain-containing protein.
   
 
 0.544
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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