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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8L0_PETMAUncharacterized protein. (210 aa)    
Predicted Functional Partners:
S4RKZ1_PETMA
RAB guanine nucleotide exchange factor (GEF) 1.
   
 0.997
S4RWF4_PETMA
Uncharacterized protein.
    
 0.989
S4RG03_PETMA
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.
    
 
 0.959
S4RDP5_PETMA
Early endosome antigen 1.
    
 0.920
S4RAR0_PETMA
Phosphatidylinositol 3-kinase, catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.
    
 0.919
S4R9X0_PETMA
Rabenosyn, RAB effector.
   
 0.896
S4R9T6_PETMA
Uncharacterized protein.
    
 0.866
S4RCG4_PETMA
Uncharacterized protein.
    
 0.866
S4RK45_PETMA
Uncharacterized protein.
    
 0.866
S4RSD1_PETMA
VPS9 domain-containing protein.
    
 0.866
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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