Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8L5_PETMAWH2 domain-containing protein. (373 aa)    
Predicted Functional Partners:
S4RS77_PETMA
Myosin light chain 1.
   
 
 0.662
S4RLU0_PETMA
Acyl-CoA thioesterase 13.
      
 0.629
S4RBZ8_PETMA
Uncharacterized protein.
   
 0.613
S4RVX5_PETMA
SH3 domain-containing protein.
   
 0.613
S4RVY1_PETMA
Uncharacterized protein.
   
 0.613
S4RKX2_PETMA
LIM zinc-binding domain-containing protein.
   
 0.612
S4RUX5_PETMA
Uncharacterized protein.
   
 0.612
S4RHR8_PETMA
Leucine rich repeat (in FLII) interacting protein 2.
   
   0.563
S4RZA6_PETMA
Leucine rich repeat (in FLII) interacting protein 1b.
   
   0.563
ASB2
Ankyrin repeat and SOCS box containing 2.
   
 
 0.539
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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