Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8L9_PETMAIntegrin, alpha 9; Belongs to the integrin alpha chain family. (971 aa)    
Predicted Functional Partners:
S4R6J1_PETMA
Fibrinogen C-terminal domain-containing protein.
    
 0.963
S4R497_PETMA
Uncharacterized protein.
    
 0.954
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.953
ITGB1-2
Integrin beta; Belongs to the integrin beta chain family.
   
 0.953
S4RS57_PETMA
Integrin beta.
   
 0.953
S4RX64_PETMA
Integrin beta; Belongs to the integrin beta chain family.
   
 0.950
S4RSM3_PETMA
Integrin beta; Belongs to the integrin beta chain family.
   
 0.939
S4RVL5_PETMA
Actinin, alpha 4.
     
 0.902
S4RUN4_PETMA
Protein tyrosine kinase 2ab.
    
 0.849
THBS2
Thrombospondin 2b.
    
 0.826
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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