STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8M9_PETMAUncharacterized protein. (340 aa)    
Predicted Functional Partners:
S4RJC8_PETMA
Uncharacterized protein.
 
      0.900
S4RKH0_PETMA
EF-hand calcium binding domain 1.
   
 
 0.795
S4R4J4_PETMA
Uncharacterized protein.
   
 
 0.704
S4RTW5_PETMA
IQ motif and ubiquitin domain containing.
   
 
 0.697
S4RMK2_PETMA
Uncharacterized protein.
    
   0.672
S4RVX9_PETMA
WD repeat domain 90.
    
   0.672
S4R9V4_PETMA
Zgc:153146.
   
  
 0.606
S4RA76_PETMA
Uncharacterized protein.
   
 
 0.602
PACRGL
Parkin coregulated like.
   
 
 0.570
S4RH36_PETMA
Uncharacterized protein.
    
 
 0.561
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.