Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8M9_PETMAUncharacterized protein. (340 aa)    
Predicted Functional Partners:
S4RKH0_PETMA
EF-hand calcium binding domain 1.
   
 
 0.951
S4R9V4_PETMA
Zgc:153146.
    
 
 0.940
S4RS81_PETMA
NDK domain-containing protein; Belongs to the NDK family.
   
 
 0.938
S4RTW5_PETMA
IQ motif and ubiquitin domain containing.
   
 
 0.917
S4RJC8_PETMA
Uncharacterized protein.
 
      0.900
S4R4J4_PETMA
Uncharacterized protein.
   
 
 0.847
S4RY15_PETMA
Cilia and flagella associated protein 52.
   
 
 0.830
S4RG74_PETMA
Uncharacterized protein.
   
 
 0.821
S4RMK2_PETMA
Uncharacterized protein.
    
   0.809
S4RVX9_PETMA
WD repeat domain 90.
    
   0.809
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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