Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8N4_PETMAUncharacterized protein. (249 aa)    
Predicted Functional Partners:
S4R492_PETMA
PDZ domain-containing protein.
    
   0.878
S4RFA6_PETMA
RAS-like, family 10, member A.
    
 0.678
S4R6S6_PETMA
Leucine rich repeat containing 34.
      
 0.614
GPR162
G protein-coupled receptor 153.
   
  
 0.563
S4RMV6_PETMA
Peroxisomal biogenesis factor 5.
      
 0.551
S4RMX0_PETMA
Uncharacterized protein.
      
 0.551
B1PBZ6_PETMA
Small GTPase Ras-dva.
    
 0.547
BET1L
Bet1 golgi vesicular membrane trafficking protein like.
      
 0.542
LIN7B
Lin-7 homolog B, crumbs cell polarity complex component.
    
   0.540
S4RNT5_PETMA
Lin-7 homolog B, crumbs cell polarity complex component.
    
   0.540
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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