Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8N6_PETMAWH2 domain-containing protein. (205 aa)    
Predicted Functional Partners:
S4RXW5_PETMA
ANK_REP_REGION domain-containing protein.
 
      0.900
S4R8N7_PETMA
Uncharacterized protein.
 
      0.899
S4RA42_PETMA
Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.695
S4S1K4_PETMA
Uncharacterized protein.
    
 0.642
S4RE10_PETMA
Lymphocyte cytosolic protein 1 (L-plastin).
    
 0.590
S4RAH1_PETMA
Si:ch211-117c9.2.
    
 
 0.573
S4RS80_PETMA
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
   0.565
S4RZM4_PETMA
Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.503
S4RBK0_PETMA
Uncharacterized protein.
   
 0.498
S4RKS7_PETMA
Protocadherin-related 15b.
   
 0.498
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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