STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8P6_PETMAProgrammed cell death 10a. (181 aa)    
Predicted Functional Partners:
S4RVA6_PETMA
Serine/threonine kinase 25a.
    
 
 0.976
S4R768_PETMA
CCM2_C domain-containing protein.
    
 
 0.975
S4R898_PETMA
MOB family member 4, phocein.
   
 
 0.973
S4RNS4_PETMA
DUF3402 domain-containing protein.
    
 
 0.958
S4RS94_PETMA
FGFR1 oncogene partner 2.
    
 
 0.951
PPP2R1A
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.947
S4RJ37_PETMA
Serine/threonine-protein phosphatase.
   
 
 0.932
S4RVN2_PETMA
Striatin, calmodulin binding protein 3.
    
 
 0.895
PXN-2
Paxillin.
    
 
 0.768
S4RQG6_PETMA
KRIT1 ankyrin repeat containing.
    
 
 0.681
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.