Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYB5D2Cytochrome b5 domain containing 2. (179 aa)    
Predicted Functional Partners:
S4RJD3_PETMA
E1A binding protein p300 a.
 
      0.807
ATAD3A
ATPase family AAA domain containing 3A.
      
 0.691
S4RG85_PETMA
Proton activated chloride channel 1.
      
 0.687
S4RZ78_PETMA
Zgc:153240.
      
 0.667
S4R639_PETMA
RAB3A interacting protein (rabin3).
      
 0.665
CIAO1
Probable cytosolic iron-sulfur protein assembly protein CIAO1; Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into extramitochondrial Fe/S proteins. Belongs to the WD repeat CIA1 family.
      
 0.650
S4R582_PETMA
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
   
  
 0.635
S4RPA7_PETMA
Rho-GAP domain-containing protein.
      
 0.612
S4RTV8_PETMA
Uncharacterized protein.
      
 0.609
DNASE1L3
Deoxyribonuclease; Belongs to the DNase I family.
      
 0.600
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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