Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8R0_PETMARho GTPase activating protein 21b. (1768 aa)    
Predicted Functional Partners:
RND2
Rho family GTPase 2.
    
 0.807
S4RNV7_PETMA
Regulation of nuclear pre-mRNA domain containing 1B.
      
 0.664
S4RZV1_PETMA
Mitochondrial ribosomal protein S27.
      
 0.662
S4R5W0_PETMA
ADP-ribosylation factor 2a; Belongs to the small GTPase superfamily. Arf family.
    
 0.622
S4RAJ9_PETMA
ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.
    
 0.622
S4RG39_PETMA
ADP-ribosylation factor 2a; Belongs to the small GTPase superfamily. Arf family.
    
 0.622
S4RZB6_PETMA
ADP-ribosylation factor 4a; Belongs to the small GTPase superfamily. Arf family.
    
 0.622
S4RE88_PETMA
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
  
 0.612
CTNND2
Catenin delta 2.
   
 
 0.583
S4RJH4_PETMA
Uncharacterized protein.
    
 
 0.569
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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