STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8R7_PETMAtRNA phosphotransferase 1. (209 aa)    
Predicted Functional Partners:
S4RWB4_PETMA
Nudix (nucleoside diphosphate linked moiety X)-type motif 22.
 
 
  
 0.892
S4RWV4_PETMA
Exoribonuclease 1.
      0.718
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
     
 0.680
S4RC54_PETMA
ACAS_N domain-containing protein.
     
 0.596
S4RKV6_PETMA
AMP-binding domain-containing protein.
     
 0.596
S4RNS9_PETMA
Acyl-CoA synthetase short chain family member 3.
     
 0.596
ACSS2
Acyl-CoA synthetase short chain family member 2.
     
 0.596
S4RXT9_PETMA
RNA 3'-terminal phosphate cyclase.
     
 0.538
S4RKC1_PETMA
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
   
  
 0.497
S4RJX2_PETMA
Threonyl-tRNA synthetase.
     
 0.491
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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