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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8R9_PETMANR LBD domain-containing protein. (187 aa)    
Predicted Functional Partners:
S4RB56_PETMA
Nuclear receptor domain-containing protein.
 
      0.900
S4R9C4_PETMA
Uncharacterized protein.
     
 0.790
S4RC77_PETMA
Uncharacterized protein.
    
 0.746
S4RR69_PETMA
Uncharacterized protein.
    
 0.746
S4RSA1_PETMA
Uncharacterized protein.
    
 0.746
S4RS76_PETMA
RNA binding motif protein 22.
    
 
 0.730
S4RH78_PETMA
BHLH domain-containing protein.
    
 0.697
S4RCM1_PETMA
Uncharacterized protein.
    
 0.693
S4RL68_PETMA
Uncharacterized protein.
    
 0.678
S4RR33_PETMA
SRY-box transcription factor 10.
    
 0.664
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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