Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8S1_PETMAUncharacterized protein. (235 aa)    
Predicted Functional Partners:
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.988
S4RVZ5_PETMA
Uncharacterized protein.
    
 0.976
S4RYP1_PETMA
Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.943
S4RSA8_PETMA
Uncharacterized protein.
    
 
 0.925
S4RI29_PETMA
Ubiquitin-conjugating enzyme E2T (putative); Belongs to the ubiquitin-conjugating enzyme family.
    
 0.820
S4RR28_PETMA
Ribosomal protein L31.
 
   
  0.783
S4S1L3_PETMA
Uncharacterized protein.
   
   0.769
S4RHK6_PETMA
ANK_REP_REGION domain-containing protein.
      
 0.645
S4S035_PETMA
Ubiquitin carboxyl-terminal hydrolase.
      
 0.645
S4R4W9_PETMA
Cyclin B2; Belongs to the cyclin family.
      
 0.642
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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