Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8T0_PETMAPeptidase M12B domain-containing protein. (150 aa)    
Predicted Functional Partners:
S4RYA5_PETMA
ADAMTS like 5.
 
   
 0.942
S4RB46_PETMA
Uncharacterized protein.
 
   
 0.938
S4RUX8_PETMA
Uncharacterized protein.
 
 
  0.933
S4RWY4_PETMA
Uncharacterized protein.
 
 
  0.933
S4RIP6_PETMA
ADAM metallopeptidase with thrombospondin type 1 motif, 17.
 
 
  0.931
S4RWV7_PETMA
PLAC domain-containing protein.
 
     0.929
S4RTP6_PETMA
ADAM_spacer1 domain-containing protein.
 
   
 0.925
S4RTP5_PETMA
PLAC domain-containing protein.
 
   
 0.917
S4RGA9_PETMA
Papilin a, proteoglycan-like sulfated glycoprotein.
 
      0.900
S4RG07_PETMA
Uncharacterized protein.
      
 0.674
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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