STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8T3_PETMAUncharacterized protein. (197 aa)    
Predicted Functional Partners:
S4RJI9_PETMA
Uncharacterized protein.
 
      0.899
S4RJF2_PETMA
Sema domain-containing protein.
    
 0.713
S4RWV5_PETMA
Protein kinase domain-containing protein.
    
 0.713
S4RD94_PETMA
Synaptojanin 1.
     
 0.585
TBR1
T-box brain transcription factor 1.
    
 0.547
S4RQD1_PETMA
Uncharacterized protein.
    
 0.547
S4RQZ4_PETMA
DUF4801 domain-containing protein.
    
 0.547
S4RUD4_PETMA
Uncharacterized protein.
    
 0.547
S4RUI6_PETMA
Uncharacterized protein.
    
 0.547
S4RBT6_PETMA
Tumor necrosis factor, alpha-induced protein 6.
    
0.507
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.