STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8T6_PETMABiogenesis of lysosomal organelles complex-1, subunit 1. (79 aa)    
Predicted Functional Partners:
S4RWF4_PETMA
Uncharacterized protein.
    
  0.984
S4RFU7_PETMA
Biogenesis of lysosomal organelles complex-1, subunit 3.
    
 0.951
S4RBQ1_PETMA
Biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino.
    
 0.932
S4RSJ5_PETMA
BLOC-1 related complex subunit 8.
   
 
 0.771
S4REA5_PETMA
Uncharacterized protein.
    
 
 0.731
S4R954_PETMA
Dystrobrevin binding protein 1b.
     
 0.730
S4RYJ7_PETMA
BLOC-1 related complex subunit 5.
    
 
 0.729
S4R4N9_PETMA
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
  0.687
S4REW9_PETMA
Deoxyribonuclease II, lysosomal.
   
 
  0.683
S4RTF1_PETMA
V-SNARE coiled-coil homology domain-containing protein.
     
 0.671
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.