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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8V4_PETMAAbasic site processing protein HMCES; Sensor of abasic sites in single-stranded DNA (ssDNA) required to preserve genome integrity by promoting error-free repair of abasic sites. Acts as an enzyme that recognizes and binds abasic sites in ssDNA at replication forks and chemically modifies the lesion by forming a covalent cross-link with DNA. The HMCES DNA-protein cross- link is then degraded by the proteasome. Promotes error-free repair of abasic sites by acting as a 'suicide' enzyme that is degraded, thereby protecting abasic sites from translesion synthesis (TLS) polymerases and endon [...] (306 aa)    
Predicted Functional Partners:
S4RHA6_PETMA
Uncharacterized protein.
    
  0.621
S4RHW3_PETMA
Uncharacterized protein.
    
  0.621
S4RHX2_PETMA
Uncharacterized protein.
    
  0.621
S4RJB8_PETMA
Hydin_ADK domain-containing protein.
    
  0.621
S4RTC2_PETMA
Adenylate kinase 5, like; Belongs to the adenylate kinase family.
    
  0.621
S4RWD5_PETMA
Adenylate kinase 2; Belongs to the adenylate kinase family.
    
  0.621
S4R6G0_PETMA
SprT-like domain-containing protein.
      
 0.478
S4RIR1_PETMA
Ligase IV, DNA, ATP-dependent; Belongs to the ATP-dependent DNA ligase family.
     
 0.460
S4RS67_PETMA
TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.
      
 0.444
SMARCAL1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.
      
 0.432
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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