Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R8V9_PETMAUncharacterized protein. (469 aa)    
Predicted Functional Partners:
S4RGE6_PETMA
RNA binding motif protein 25.
   
 0.981
S4RWX0_PETMA
RNA binding motif protein 25.
   
 0.981
S4RVW8_PETMA
Small nuclear ribonucleoprotein 70 (U1).
   
 0.945
S4RDS5_PETMA
PRP40 pre-mRNA processing factor 40 homolog A.
   
 0.939
SNRPC
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]
    
 0.936
S4RDQ2_PETMA
Pinin, desmosome associated protein.
   
   0.929
S4RI13_PETMA
LUC7-like (S. cerevisiae).
   
 
 0.921
S4RV90_PETMA
Splicing factor 1.
   
 0.912
S4RH22_PETMA
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.911
S4R4A6_PETMA
Small nuclear ribonucleoprotein G.
    
 0.902
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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