Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8W5_PETMAUncharacterized protein. (991 aa)    
Predicted Functional Partners:
S4R980_PETMA
Uncharacterized protein.
 
    
 0.898
S4S1N9_PETMA
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.673
ATP8A1
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
   
  
 0.614
S4RYG8_PETMA
Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.
      
 0.613
S4RE61_PETMA
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
      
 0.610
S4RZQ0_PETMA
RING-type domain-containing protein.
      
 0.610
S4RET3_PETMA
Glutaredoxin 5 homolog (S. cerevisiae).
      
 0.609
S4RB93_PETMA
Solute carrier family 17 member 6b.
   
 
 0.585
S4RTF1_PETMA
V-SNARE coiled-coil homology domain-containing protein.
     
 0.555
NFS1
Aminotran_5 domain-containing protein.
      
 0.553
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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