STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8W8_PETMADNA ligase. (736 aa)    
Predicted Functional Partners:
S4RTM9_PETMA
XRCC1_N domain-containing protein.
   
 0.983
S4RX86_PETMA
X-ray repair complementing defective repair in Chinese hamster cells 1.
   
 0.983
S4RTM7_PETMA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.964
S4RCM6_PETMA
Zgc:110224.
   
 0.956
S4RKI1_PETMA
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.939
S4R8Y3_PETMA
Uncharacterized protein.
   
 0.933
S4RXT5_PETMA
Polynucleotide kinase 3'-phosphatase.
   
 0.926
S4RCE7_PETMA
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
  
 0.915
S4RBC3_PETMA
Uncharacterized protein.
  
 0.851
S4RYU8_PETMA
Zgc:110269.
  
 0.851
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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