Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8X7_PETMAUncharacterized protein. (159 aa)    
Predicted Functional Partners:
S4RQR5_PETMA
Fibronectin type-III domain-containing protein.
 
     0.949
S4RS15_PETMA
Uncharacterized protein.
 
      0.900
S4RW47_PETMA
Insulin-like growth factor binding protein 5b.
    
 0.730
S4RRF4_PETMA
Uncharacterized protein.
    
   0.583
S4RC78_PETMA
NTR domain-containing protein.
    
 0.522
TIMP1
TIMP metallopeptidase inhibitor 1.
    
 0.522
S4RBT6_PETMA
Tumor necrosis factor, alpha-induced protein 6.
    
 0.416
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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