Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
S4R8Y0_PETMADUF3546 domain-containing protein. (573 aa)    
Predicted Functional Partners:
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.978
S4RPP8_PETMA
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.960
S4RSK9_PETMA
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.960
S4RZJ8_PETMA
Mtr4 exosome RNA helicase.
   
 0.958
S4R874_PETMA
C3H1-type domain-containing protein.
   
 0.956
S4REI6_PETMA
Phosphorylated adaptor for RNA export.
   
 0.932
S4RJK2_PETMA
Polymerase (DNA-directed), delta interacting protein 3.
   
 0.890
S4RXJ6_PETMA
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa.
   
 0.890
S4RDS5_PETMA
PRP40 pre-mRNA processing factor 40 homolog A.
   
 
 0.857
S4R8Z3_PETMA
RRM domain-containing protein.
     
 0.811
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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