Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8Y2_PETMAUncharacterized protein. (189 aa)    
Predicted Functional Partners:
S4RMF7_PETMA
UBX domain protein 7.
   
 0.994
S4RLQ3_PETMA
AAA domain-containing protein; Belongs to the AAA ATPase family.
 
  0.987
S4RS79_PETMA
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
 
 
  0.983
S4RYG2_PETMA
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
 
  0.972
S4R7Q9_PETMA
AAA domain-containing protein; Belongs to the AAA ATPase family.
 
 
  0.964
S4RSM9_PETMA
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.958
S4RHJ9_PETMA
NSFL1 (p97) cofactor (p47).
   
 0.954
S4RQ99_PETMA
NPL4 homolog, ubiquitin recognition factor.
   
 0.951
S4RHX4_PETMA
Cullin 1b; Belongs to the cullin family.
   
 0.940
S4RP52_PETMA
Valosin containing protein lysine (K) methyltransferase.
   
 0.938
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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