STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R8Y3_PETMAUncharacterized protein. (363 aa)    
Predicted Functional Partners:
S4RKI1_PETMA
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.999
S4RIR1_PETMA
Ligase IV, DNA, ATP-dependent; Belongs to the ATP-dependent DNA ligase family.
   
 0.992
S4RPZ6_PETMA
MRE11 homolog A, double strand break repair nuclease.
   
 0.990
S4RE72_PETMA
Uncharacterized protein.
    
 0.984
S4RFM2_PETMA
DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae).
    
 0.983
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
 0.969
S4RK95_PETMA
DNA ligase.
   
 0.945
S4R8W8_PETMA
DNA ligase.
   
 0.933
S4RLD6_PETMA
DNA cross-link repair 1B.
    
 0.901
S4RPL8_PETMA
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.870
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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