Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8Y3_PETMAUncharacterized protein. (363 aa)    
Predicted Functional Partners:
S4RKI1_PETMA
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.999
S4RIR1_PETMA
Ligase IV, DNA, ATP-dependent; Belongs to the ATP-dependent DNA ligase family.
   
 0.997
S4RFM2_PETMA
DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae).
    
 0.995
S4RTM7_PETMA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
 
 0.982
S4RPZ6_PETMA
MRE11 homolog A, double strand break repair nuclease.
   
 0.981
S4RHC2_PETMA
RAD50 homolog, double strand break repair protein.
    
 0.973
S4RPL8_PETMA
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.969
S4RUC9_PETMA
TAN domain-containing protein.
    
 0.969
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
 0.957
S4RRM4_PETMA
Exonuclease 1.
    
 
 0.949
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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