Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8Y4_PETMAUncharacterized protein. (213 aa)    
Predicted Functional Partners:
S4RI71_PETMA
DEP domain-containing protein.
 
     0.937
S4RHX4_PETMA
Cullin 1b; Belongs to the cullin family.
    
  0.467
S4R5Z4_PETMA
Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.433
S4RES0_PETMA
Rho-GAP domain-containing protein.
    
 0.433
S4RFE2_PETMA
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.433
S4RPC5_PETMA
Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.433
S4RTF2_PETMA
Glutamine synthetase.
   
 
 0.413
S4REN9_PETMA
Phosphoinositide-3-kinase, regulatory subunit 1 (alpha).
     
 0.410
S4RK06_PETMA
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
   
 
  0.403
ARHGAP11B
Rho GTPase activating protein 11B.
   
 
 0.400
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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