Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R8Z0_PETMAUncharacterized protein. (371 aa)    
Predicted Functional Partners:
S4R9F1_PETMA
General transcription factor IIH, polypeptide 5.
      
 0.894
S4RMY9_PETMA
Uncharacterized protein.
      
 0.828
S4RXW2_PETMA
Prolyl-tRNA synthetase 2, mitochondrial.
      
 0.696
SCAF8
SR-related CTD associated factor 8.
      
 0.695
S4RUG9_PETMA
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.695
S4RAY7_PETMA
Leucine-rich pentatricopeptide repeat containing.
      
 0.646
S4RDS3_PETMA
Uncharacterized protein.
      
 0.611
S4RQ39_PETMA
Uncharacterized protein.
      
 0.609
S4RZC9_PETMA
PKS_ER domain-containing protein.
      
 0.603
S4RDE9_PETMA
Acylglycerol kinase.
   
  
 0.593
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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