S4R8Z2_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R8Z2_PETMA

ANF_receptor domain-containing protein. (350 aa)

Predicted Functional Partners:

S4REZ6_PETMA

0.921

S4R6X2_PETMA

0.896

NPR1

0.891

S4R4B4_PETMA

0.874

S4RBQ7_PETMA

0.818

S4RUP6_PETMA

0.766

S4RAT3_PETMA

0.751

S4RRT5_PETMA

0.712

S4RY50_PETMA

0.647

S4RWF4_PETMA

0.521

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NPR1	S4R8Z2_PETMA	ENSPMAP00000009301	ENSPMAP00000001673	Guanylate cyclase.	ANF_receptor domain-containing protein.	0.891
NPR1	S4REZ6_PETMA	ENSPMAP00000009301	ENSPMAP00000003778	Guanylate cyclase.	Guanylate cyclase.	0.900
NPR1	S4RWF4_PETMA	ENSPMAP00000009301	ENSPMAP00000009544	Guanylate cyclase.	Uncharacterized protein.	0.521
S4R4B4_PETMA	S4R8Z2_PETMA	ENSPMAP00000000043	ENSPMAP00000001673	Guanylate cyclase.	ANF_receptor domain-containing protein.	0.874
S4R4B4_PETMA	S4RWF4_PETMA	ENSPMAP00000000043	ENSPMAP00000009544	Guanylate cyclase.	Uncharacterized protein.	0.521
S4R6X2_PETMA	S4R8Z2_PETMA	ENSPMAP00000000952	ENSPMAP00000001673	Protein kinase domain-containing protein.	ANF_receptor domain-containing protein.	0.896
S4R6X2_PETMA	S4REZ6_PETMA	ENSPMAP00000000952	ENSPMAP00000003778	Protein kinase domain-containing protein.	Guanylate cyclase.	0.863
S4R6X2_PETMA	S4RWF4_PETMA	ENSPMAP00000000952	ENSPMAP00000009544	Protein kinase domain-containing protein.	Uncharacterized protein.	0.521
S4R8Z2_PETMA	NPR1	ENSPMAP00000001673	ENSPMAP00000009301	ANF_receptor domain-containing protein.	Guanylate cyclase.	0.891
S4R8Z2_PETMA	S4R4B4_PETMA	ENSPMAP00000001673	ENSPMAP00000000043	ANF_receptor domain-containing protein.	Guanylate cyclase.	0.874
S4R8Z2_PETMA	S4R6X2_PETMA	ENSPMAP00000001673	ENSPMAP00000000952	ANF_receptor domain-containing protein.	Protein kinase domain-containing protein.	0.896
S4R8Z2_PETMA	S4RAT3_PETMA	ENSPMAP00000001673	ENSPMAP00000002314	ANF_receptor domain-containing protein.	Guanylate cyclase 1 soluble subunit beta 1; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.751
S4R8Z2_PETMA	S4RBQ7_PETMA	ENSPMAP00000001673	ENSPMAP00000002638	ANF_receptor domain-containing protein.	Guanylate cyclase.	0.818
S4R8Z2_PETMA	S4REZ6_PETMA	ENSPMAP00000001673	ENSPMAP00000003778	ANF_receptor domain-containing protein.	Guanylate cyclase.	0.921
S4R8Z2_PETMA	S4RRT5_PETMA	ENSPMAP00000001673	ENSPMAP00000007922	ANF_receptor domain-containing protein.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.712
S4R8Z2_PETMA	S4RUP6_PETMA	ENSPMAP00000001673	ENSPMAP00000008936	ANF_receptor domain-containing protein.	Guanylate cyclase.	0.766
S4R8Z2_PETMA	S4RWF4_PETMA	ENSPMAP00000001673	ENSPMAP00000009544	ANF_receptor domain-containing protein.	Uncharacterized protein.	0.521
S4R8Z2_PETMA	S4RY50_PETMA	ENSPMAP00000001673	ENSPMAP00000010141	ANF_receptor domain-containing protein.	Guanylate cyclase 1, soluble, beta 2; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.647
S4RAT3_PETMA	S4R8Z2_PETMA	ENSPMAP00000002314	ENSPMAP00000001673	Guanylate cyclase 1 soluble subunit beta 1; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	ANF_receptor domain-containing protein.	0.751
S4RAT3_PETMA	S4REZ6_PETMA	ENSPMAP00000002314	ENSPMAP00000003778	Guanylate cyclase 1 soluble subunit beta 1; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Guanylate cyclase.	0.865