Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8Z3_PETMARRM domain-containing protein. (89 aa)    
Predicted Functional Partners:
S4RZJ8_PETMA
Mtr4 exosome RNA helicase.
    
 0.999
S4RI20_PETMA
Exosome component 8.
    
 0.996
S4R4U0_PETMA
Exosome component 1.
    
 0.995
S4R881_PETMA
Exosome component 2.
    
 0.995
S4RUT2_PETMA
Exosome component 3.
    
 0.995
S4RRF2_PETMA
Uncharacterized protein.
   
 0.994
S4RYT0_PETMA
Exosome component 7.
    
 0.991
S4R7X0_PETMA
Exosome component 4.
    
 0.984
S4RJI1_PETMA
Exosome component 9.
    
 0.979
SF3B2
Splicing factor 3b subunit 2.
    
 0.971
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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