STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R902_PETMAWD_REPEATS_REGION domain-containing protein. (335 aa)    
Predicted Functional Partners:
S4R4R8_PETMA
General transcription factor IIIC, polypeptide 3.
    
 0.951
S4RVT5_PETMA
zf-TFIIIC domain-containing protein.
    
 0.933
S4RHX2_PETMA
Uncharacterized protein.
    
 0.863
S4RK02_PETMA
Uncharacterized protein.
    
 0.833
S4RLW1_PETMA
Ig-like domain-containing protein.
    
 0.833
S4RR76_PETMA
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.717
S4RZ01_PETMA
Uncharacterized protein.
    
 0.710
S4RV21_PETMA
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.694
S4RPG0_PETMA
Myb_DNA-bind_7 domain-containing protein.
    
 0.693
S4RHW3_PETMA
Uncharacterized protein.
    
 0.688
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.