Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R912_PETMAUncharacterized protein. (383 aa)    
Predicted Functional Partners:
S4RWH9_PETMA
Cadherin_C domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins.
 
   
  0.951
S4RZA1_PETMA
Uncharacterized protein.
  
  
 
0.909
S4RAP3_PETMA
Uncharacterized protein.
  
  
 
0.906
S4REE4_PETMA
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
  
  
 
0.906
S4RC73_PETMA
Catenin (cadherin-associated protein), alpha 1.
    
 0.791
S4RFS7_PETMA
Uncharacterized protein.
  
 
 
0.695
S4RD64_PETMA
Uncharacterized protein.
     
 
0.637
CTNND2
Catenin delta 2.
    
 0.599
S4RFR9_PETMA
Cadherin 10, type 2a (T2-cadherin); Cadherins are calcium-dependent cell adhesion proteins.
  
  
 
0.597
S4RHR4_PETMA
Uncharacterized protein.
  
  
 
0.594
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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